| Eğitim / Akademik Bilgisi | ||
|---|---|---|
| Lisans | Ege Üniversitesi Fen Fakültesi Biyoloji Bölümü | 2005 |
| Yüksek Lisans | Dokuz Eylül Üniversitesi Sağlık Bilimleri Enstitüsü Medikal İnformatik (Tıbbi Bilişim) Anabilim Dalı | 2009 |
| Doktora | Dokuz Eylül Üniversitesi Sağlık Bilimleri Enstitüsü Biyomühendislik Doktora Programı | 2014 |
| Yardımcı Doçent | Dokuz Eylül Üniversitesi İzmir Uluslararası Biyotıp ve Genom Enstitüsü | 2016 |
| Doçent | Üniversiletlerarası Kurul Başkanlığı Biyoloji | 2018 |
| NO | AD | YIL |
| 1 | An API for dynamic estimation of reference intervals for functional abundances of gut microbiota... | 2023 |
| 2 | TRAIL promotes the polarization of human macrophages toward a proinflammatory M1 phenotype and is as... | 2023 |
| 3 | Shared Biological Pathways and Processes in Patients with Intellectual Disability: A Multicenter Stu... | 2023 |
| 4 | In the light of evolution: keratins as exceptional tumor biomarkers... | 2023 |
| 5 | Differential Occupancy and Regulatory Interactions of KDM6A in Bladder Cell Lines... | 2023 |
| 6 | Whole Genome Analysis of Dizygotic Twins With Autism Reveals Prevalent Transposon Insertion Within N... | 2023 |
| 7 | An in silico approach to the identification of diagnostic and prognostic markers in low-grade glioma... | 2023 |
| 8 | FLI1 and FRA1 transcription factors drive the transcriptional regulatory networks characterizing mus... | 2023 |
| 9 | A Counterintuitive Neutrophil-Mediated Pattern in COVID-19 Patients Revealed through Transcriptomics... | 2022 |
| 10 | VARS1 mutations associated with neurodevelopmental disorder are located on a short amino acid stretc... | 2022 |
| 11 | Identification of neoplasm-specific signatures of miRNA interactions by employing a systems biology ... | 2022 |
| 12 | Alteration of miRNAs in small neuron-derived extracellular vesicles of alzheimer's disease patients ... | 2022 |
| 13 | Repeat expression is linked to patient survival and exhibits single nucleotide variation in pancreat... | 2022 |
| 14 | TAp73? is Upregulated in the Most Common Human Cancers... | 2022 |
| 15 | Evaluation of ATAD2 as a Potential Target in Hepatocellular Carcinoma... | 2021 |
| 16 | Transcriptome Dynamics of Human Neuronal Differentiation From iPSC... | 2021 |
| 17 | Identification of differentially expressed genomic repeats in primary hepatocellular carcinoma and t... | 2021 |
| 18 | In Silico Methods for the Identification of Diagnostic and Favorable Prognostic Markers in Acute Mye... | 2021 |
| 19 | Mining Natural Products with Anticancer Biological Activity through a Systems Biology Approach... | 2021 |
| 20 | Different selection dynamics of S and RdRp between SARS-CoV-2 genomes with and without the dominant ... | 2021 |
| 21 | Alternative splicing and gene co-expression network-based analysis of dizygotic twins with autism-sp... | 2021 |
| 22 | Investigating Molecular Determinants of Cancer Cell Resistance to Ionizing Radiation Through an Inte... | 2021 |
| 23 | TAp73ß Can Promote Hepatocellular Carcinoma Dedifferentiation... | 2021 |
| 24 | Current mutatome of SARS-CoV-2 in Turkey reveals mutations of interest.... | 2021 |
| 25 | Signature changes in the expressions of protein-coding genes, lncRNAs, and repeat elements in early ... | 2020 |
| 26 | Mutations of SARS-CoV-2 nsp14 exhibit strong association with increased genome-wide mutation load... | 2020 |
| 27 | Analysis of open chromatin regions in bladder cancer links ß-catenin mutations and Wnt signaling wit... | 2020 |
| 28 | Differential expression of full length and N-terminally truncated FAM134B isoforms in normal physiol... | 2020 |
| 29 | Mutation density changes in SARS-CoV-2 are related to the pandemic stage but to a lesser extent in t... | 2020 |
| 30 | RdRp mutations are associated with SARS-CoV-2 genome evolution... | 2020 |
| 31 | TEffectR: an R package for studying the potential effects of transposable elements on gene expressio... | 2019 |
| 32 | Dysregulated expression of repetitive DNA in ER+/HER2- breast cancer... | 2019 |
| 33 | Expression dynamics of repetitive DNA in early human embryonic development... | 2019 |
| 34 | C-Reactive Protein and Platelet-Lymphocyte Ratio as Potential Tumor Markers in Low-Alpha-Fetoprotein... | 2018 |
| 35 | RTFAdb: A database of computationally predicted associations between retrotransposons and transcript... | 2018 |
| 36 | In silico Phylogenetic Analysis of hAT Transposable Elements in Plants... | 2018 |
| 37 | PlanTEnrichment: A tool for enrichment analysis of transposable elements in plants... | 2017 |
| 38 | Regulation of noncoding transcriptome in developing photoreceptors by rod differentiation factor NRL... | 2017 |
| 39 | Discovery and Annotation of Plant Endogenous Target Mimicry Sequences from Public Transcriptome Libr... | 2017 |
| 40 | İnsanda Uzun Kodlanmayan RNA?ların Doku İfade Örüntüleri ve Varsayımsal İşlevlerinin Benzeşme Yayılm... | 2017 |
| 41 | MicroRNA exocytosis by large dense-core vesicle fusion... | 2017 |
| 42 | Differential expression of hyperhydricity responsive peach microRNAs... | 2016 |
| 43 | NRL-regulated transcriptome dynamics of developing rod photoreceptors... | 2016 |
| 44 | Next generation sequencing technology and genomewide data analysis: Perspectives for retinal researc... | 2016 |
| 45 | PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs)... | 2016 |
| 46 | sandflyDST: a dynamic web?based decision support tool for the morphological identification of sandfl... | 2016 |
| 47 | StatXFinder: a web-based self-directed tool that provides appropriate statistical test selection for... | 2015 |
| 48 | CorRECTreatment: a web-based decision support tool for rectal cancer treatment that uses the analyti... | 2015 |
| 49 | Early Biventricular Molecular Responses to an Acute Myocardial Infarction... | 2012 |
| 50 | Genome-Wide Gene Expression Analysis of NIH 3T3 Cell Line Under Mechanical Stimulation... | 2011 |
| 51 | mESAdb: microRNA Expression and Sequence Analysis Database... | 2011 |
| NO | AD | TARİH |
| 1 | Identifying glioblastoma cellular heterogeneity and defining glioma stemness related signatures thro... | 04/10/2023 - 06/10/2023 |
| 2 | Development of a computational pipeline for exploring transposable element derived promoter regions... | 03/10/2023 - 06/10/2023 |
| 3 | A molecular portrait of retinoids and EZH2 inhibitors cooperation to orchestrate cytotoxic effects o... | 08/07/2023 - 12/07/2023 |
| 4 | Osimertinib resistance mechanisms in non-small cell lung cancer using focused CRISPRScreen: FOSL1 an... | 08/07/2023 - 12/07/2023 |
| 5 | A new tool for investigating biomarker of hepatocellular carcinoma diagnosis and prognosis: Fusion t... | 20/06/2023 - 23/06/2023 |
| 6 | On-chip platform for derivation of ocular cells from hiPSCs... | 28/03/2023 - |
| 7 | Development of a pipeline for the analysis of the regulatory functions of transposable elements in a... | 16/03/2023 - 18/03/2023 |
| 8 | Investigating Partners in Crime: Osimertinib Resistance Mechanisms in Non-small Cell Lung Cancer Usi... | 06/08/2022 - 09/08/2022 |
| 9 | Genome-wide CRISPR screen identifies BUB1 as a cancer-dependency gene in malignantpleural mesothelio... | 09/07/2022 - 14/07/2022 |
| 10 | The Effect of Histone Variant H2A.Z-1 Knockdown In Epithelial To Mesenchymal Transition... | 09/06/2022 - 12/06/2022 |
| 11 | Analysis of Noncoding RNAs Critical to the Mesenchymal Epithelial Transformation Process... | 09/06/2022 - 12/06/2022 |
| 12 | Küçük Hücreli Dışı Akciğer Kanserinde Genetik Olmayan Osimertinib Direnç Mekanizmalarının... | 28/10/2021 - 31/10/2021 |
| 13 | Modulation of macrophage polarization by TNF-related apoptosis-inducing ligand... | 01/09/2021 - 04/09/2021 |
| 14 | Identification of Essential Genes in Malignant Pleural Mesothelioma Using Genome-Wide CRISPR/Cas9-Ba... | 28/01/2021 - 31/01/2021 |
| 15 | İnsan makrofaj polarizasyonunda yeni bir modülatör... | 20/11/2020 - 22/11/2020 |
| 16 | Mezenkimal Epitelyal Dönüşüm Sürecini Düzenleyen Transkripsyon Faktörlerinin Epigenetik Yenid... | 15/11/2019 - 16/11/2019 |
| 17 | Mezenkimal Epitelyal Dönüşüm Sürecinde Epigenetik Yeniden Programlamayı Etkileyen Transkripsiy... | 14/11/2019 - 17/11/2019 |
| 18 | Hepatoselüler karsinomda TGF-ß yanıtının hücresel mekanizmalarının araştırılması... | 14/11/2019 - 17/11/2019 |
| 19 | TAP73?ÜN HEPATOSELÜLER KARSINOMADA PROTÜMÖROJENİK ROLÜ ... | 14/11/2019 - 17/11/2019 |
| 20 | Mezenkimal Epitelyal Dönüşüm Sürecinin Epigenetik Altyapısını Düzenleyen Transkripsiyon Fak... | 08/11/2019 - 10/11/2019 |
| 21 | TAp73'ün hepatoselüler karsinomada tümör teşvik edici rolü... | 27/10/2019 - 30/10/2019 |
| 22 | Robust Gene Co-Expression Network Analysis... | 18/10/2019 - 20/10/2019 |
| 23 | Abnormal Expression Patterns of Repetitive DNA Elements Uncovered in Breast Cancer... | 18/09/2019 - 22/09/2022 |
| 24 | Differential Network Analysis with Partial Least Square Regression... | 03/10/2018 - 07/10/2018 |
| 25 | Investigation of the Cellular Mechanisms of TGF-beta-induced Senescence-Resistance in Hepatocellular... | 05/09/2018 - 08/09/2018 |
| 26 | Differential Network Analysis on Mouse Brain Parts Using Plsr... | 28/04/2018 - 30/04/2018 |
| 27 | Gene Co-Expression Network Analysis with Partial Least Squares Regression... | 09/11/2017 - 11/11/2017 |
| 28 | A Search for Common Pre-apoptotic Signals/Pathways in Mouse Models of Retinal Degeneration... | 06/05/2017 - 11/05/2017 |
| 29 | A WEB BASED TOOL FOR ENRICHMENT ANALYSIS OF TRANSPOSABLE ELEMENTS IN PLANTS... | 24/04/2017 - 28/04/2017 |
| 30 | COMPUTATIONAL TOOLS FOR THE DISCOVERY AND ANNOTATION OF LONG NON- CODING RNA (LNCRNA) SPECIES... | 24/04/2017 - 28/07/2017 |
| 31 | İnsan ve Fare Akciğer Gelişimine Ait Gen İfadesi Zaman Serilerinin Dinamik Zaman Bükmesi Algori... | 26/10/2016 - 29/10/2016 |
| 32 | Distinct Expression of Heat Shock Proteins in Mouse Models of Retinal Degeneration... | 01/05/2016 - 05/05/2016 |
| 33 | RetSeq: Next Generation Sequencing Database for Exploring Retinal Development, Aging and Disease... | 03/05/2015 - 07/05/2015 |
| 34 | Towards a Web-Based Decision Support Tool for Selecting Appropriate Statistical Test in Medical and ... | 31/08/2014 - 03/09/2014 |
| 35 | Computer Based Extraction of Phenoptypic Features of Human Congenital Anomalies from the Digital Lit... | 31/08/2014 - 03/09/2014 |
| 36 | DSRCT: Rektum Kanseri Tedavisinde Karar Desteği... | 27/10/2013 - 30/10/2013 |
| 37 | A Data-driven Living Review for Pharmacogenomic Decision Support in Cancer Treatment... | 26/08/2012 - 29/08/2012 |
| 38 | Lityum aracılıklı Wnt-bcatenin aktivasyonunun karaciğer kanserinde kök hücre fenotipine etkisi... | 27/10/2011 - 30/10/2011 |
| 39 | De-novo assembly of mouse photoreceptor transcriptome identifies un-annotated lncRNAs regulated by N... | 06/05/2011 - 11/05/2011 |
| 40 | Genome-wide expression analysis of lithium induced cell cycle arrest in hepatocellular carsinoma cel... | 20/01/2008 - 22/01/2008 |
| 41 | Sağlık Alanındaki Internet Sitelerinin Değerlendirilmesi İçin Bir Rehber Önerisi... | 15/11/2007 - 18/11/2007 |
| 42 | Tıp Bilişimi Eğitimine Katkı Veren 10 Önde Gelen Internet Sitesinin Kalite Değerlendirmesi... | 04/05/2007 - 05/05/2007 |
| 43 | Sağlık Alanındaki Internet Sitelerinin Değerlendirilmesi İçin Bir Rehber Önerisi... | 04/05/2007 - 05/05/2007 |
| 44 | MicroRNA sequence and expression database... | 16/04/2007 - 19/04/2007 |
| 45 | hasGO: A Gene Ontology Based Web Tool for Functional Analysis and Biological Interpretation of Gene ... | 16/04/2007 - 19/04/2007 |
| 46 | MicroRNA sequence and expression database... | 11/01/2007 - 13/07/2007 |
| NO | BÖLÜM ADI | YIL |
| 1 | PlanTEnrichment: A How-to Guide on Rapid Identification of Transposable Elements Associated with Regions of Interest in Select Plant Genomes Plant Genomic and Cytogenetic Databases... | 2023 |
| 2 | In Silico Identification of Stress-Associated Transposable Elements in Arabidopsis thaliana Using Public Transcriptome Data Plant Transposable Elements... | 2021 |
| NO | AD | TARIH |
| 1 | Mezenkimal Epitelyal Dönüşüm Sürecinde Rol Alan Mikrorna'Ların Tanımlanması Ve Fonksiyonel Analizleri... | 3/2023 - / |
| 2 | Meme Kanseri MCF-7 Hücre modelinde ZEB1 ile İndüklenen EMT/MET Süreçlerindeki Kritik LncRNA?ların Tanımlanması ve Fonksiyonel Analizleri... | 8/2023 - / |
| 3 | G-fed: Genomik Araştırma Ve Uygulamalar İçin Dinamik Onam Destekli Mahrem Federe Arama Ve Analitik Platformu... | 8/2022 - / |
| 4 | Kişiye Özgü Optimal Diyet Örüntüsü İçin Mikrobiyota Ve Genomik Temelli Bir Karar Destek Sistemi... | 8/2021 - 2/2022 |
| 5 | Gen Düzenleyici Rolleri Olan Transpozonların Tahminlenmesine Yönelik Bir Biyoinformatik Araç Geliştirilmesi Ve Mezenkimal Epitelyal Dönüşüm Sürecinde Yer Alan Transpozonların Belirlenmesi... | 9/2021 - / |
| 6 | Mezenkimal Epitelyal Dönüşümün Epigenetiği... | 3/2021 - / |
| 7 | Mezenkimal Epitelyal Dönüşüm Sürecinde Kritik Olan Uzun Kodlamayan RNA'ların İşlevsel Analizleri... | 7/2020 - / |
| 8 | Gliom Oluşumunda Rol Oynayan Kalıcı Epigenomik Değişimlerin IDH1-TERT-MYC Ekseninde Karakterizasyonu... | 6/2018 - / |
| 9 | Kan Dolaşımındaki Tümör Dna Ve Rna'sının Yüksek Hassasiyetli Analizi Yöntemini Kullanarak, Akciğer Kanseri Tanı Ve Tedavi Izlemi Için Yeni Biyo Belirteçlerin Karakterizasyonu... | 6/2018 - / |
| 10 | Alzheimer Hastalığının Tanısında ve Yayılımında Nöron Kökenli Ekzozomlar... | 6/2018 - / |
| 11 | TRAIL'in Primer İnsan Makrofajlarının M1, M2a ve M2c Polarizasyonuna Etkisi... | 11/2018 - 4/2022 |
| 12 | "Sendromik Olmayan" Otizm Spektrum Bozukluğu Tanılı İkisi de Etkilenmiş İkiz Çocuk ve Ergenlerin ve Anne Babalarının Genomlarının Tüm Genom Dizileme Yöntemi İle Analizi... | 1/2017 - 1/2018 |
| 13 | Mezenkimal Epitelyal Dönüşüm (MET) Sürecinde Epigenetik Yeniden Programlamayı Etkileyen Transkripsiyon Faktörlerinin Belirlenmesi... | 10/2017 - 6/2021 |
| 14 | Mavi Gen... | 9/2014 - 9/2017 |
| NO | Görev | |
| 1 | İzmir Uluslararası Biyotıp ve Genom Enstitüsü Biyotıp ve Sağlık Teknolojileri Anabilim Dalı Başkanı, Mart 2019- Mart 2022 | |
| 2 | İzmir Uluslararası Biyotıp ve Genom Enstitüsü Enstitü Kurulu Üyesi, Mart 2019- Mart 2022 |
