| Education/Academic Info | ||
|---|---|---|
| Undergraduate Degree | Boğaziçi University Mühendislik Fakültesi Kimya Mühendisliği | 2006 |
| Master's Degree | Boğaziçi University Fen Bilimleri Enstitüsü Kimya Mühendisliği | 2008 |
| PhD (Doctorate) | Universiteit Utrecht Universiteit Utrecht Kimya | 2013 |
| NO | NAME | YEAR |
| 1 | Differential Occupancy and Regulatory Interactions of KDM6A in Bladder Cell Lines... | 2023 |
| 2 | VARS1 mutations associated with neurodevelopmental disorder are located on a short amino acid stretc... | 2022 |
| 3 | Genetic complementation screening and molecular docking give new insight on phosphorylation-dependen... | 2022 |
| 4 | Novel biallelic variants affecting the OTU domain of the gene OTUD6B associate with severe intellect... | 2022 |
| 5 | Modeling the Dynamics of Protein?Protein Interfaces, How and Why?... | 2022 |
| 6 | A C-term truncated EIF2B gamma protein encoded by an intronically polyadenylated isoform introduces ... | 2022 |
| 7 | Türk Ulusal Bilim e-Altyapısı TRUBA'da Moleküler Dinamik Paketi GROMACS'in Performans Optimizasy... | 2021 |
| 8 | Arayüz Mutasyonlarının Protein Etkileşimlerine Tesirini Tahmin Eden Algoritmalarla HADDOCK'un Pe... | 2021 |
| 9 | Assessment of the CASP14 assembly predictions... | 2021 |
| 10 | Predicting the Specificity-Determining Positions of the Receptor Tyrosine Kinase Axl... | 2021 |
| 11 | How Far Are We from the Rapid Prediction of Drug Resistance Arising Due to Kinase Mutations?... | 2021 |
| 12 | Autosomal recessive variants in TUBGCP2 alter the gamma-tubulin ring complex leading to neurodevelop... | 2021 |
| 13 | More favorable palmitic acid over palmitoleic acid modification of Wnt3 ensures its localization and... | 2019 |
| 14 | In Silico Phylogenetic and Structural Analyses of Plant Endogenous Danger Signaling Molecules upon S... | 2019 |
| 15 | Novel mutations in KMT2B offer pathophysiological insights into childhood-onset progressive dystonia... | 2019 |
| 16 | Defining distance restraints in HADDOCK... | 2018 |
| 17 | Peptide Derivatives of Erythropoietin in the Treatment of Neuroinflammation and Neurodegeneration... | 2018 |
| 18 | Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Res... | 2018 |
| 19 | M3: an integrative framework for structure determination of molecular machines... | 2017 |
| 20 | Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1... | 2017 |
| 21 | Structural snapshots of Xer recombination reveal activation by synaptic complex remodeling and DNA b... | 2016 |
| 22 | The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes... | 2016 |
| 23 | Defining the limits of homology modeling and information-driven docking... | 2013 |
| 24 | On the usefulness of ion-mobility mass spectrometry and SAXS data in scoring docking decoys... | 2013 |
| 25 | Advances in integrative Modeling of Bimolecular Complexes... | 2013 |
| 26 | Clustering biomolecular complexes by residue contacts similarity... | 2012 |
| 27 | A multidomain flexible docking approach to deal with large conformational changes in the modeling of... | 2011 |
| 28 | Alternative allosteric mechanisms can regulate the substrate and E2 in SUMO conjugation... | 2011 |
| 29 | Building Macromolecular Complexes by Information-driven Docking... | 2010 |
| 30 | Understanding the role of the Josephin domain in the PolyUb binding and cleavage properties of ataxi... | 2010 |
| 31 | Cataloging and organizing p73 interactions in cell cycle arrest and apoptosis... | 2008 |
| NO | NAME | DATE |
| 1 | Memeli Mastl kinazın aktivasyon mekanizmasının temellerinin saptanması... | 28/10/2021 - 31/10/2021 |
| 2 | Tam family protein Axl's ligand selectivity is regulated by three charged amino acids... | 21/07/2019 - 25/07/2019 |
| 3 | Towards charachterizing the factors tuning the specificty of biomolecular complexes... | 13/12/2018 - 15/12/2018 |
| 4 | A Structural Insight into DNA Methylation... | 25/10/2018 - 27/10/2018 |
| 5 | Analysis of Mitotic Functions of Mastl Kinase... | 05/09/2018 - 08/09/2018 |
| NO | CHAPTER TITLE | YEAR |
| 1 | Protein Etkileşimlerinin Deneysel ve Hesaplamalı Yaklaşımlarla Bütüncül Olarak Modellenmesi Protein Yapısı, Mühendisliği, Etkileşimleri... | 2021 |
| 2 | Information-Driven Structural Modelling of Protein Protein Interactions Molecular modeling of proteins... | 2015 |
| NO | NAME | DATE |
| 1 | İNSAN DNA METİLTRANSFERAZ 3A ENZİMİNİN ÇALIŞMA İLKELERİNİN HESAPLAMALI YÖNTEMLERLE TANIMLANMASI... | 3/2020 - 3/2021 |
| 2 | Kornea endoteli dokusunun kök hücre ve biyomühendislik yaklaşımlarıyla geliştirilmesi... | 7/2019 - / |
| 3 | Epigenetics of Epithelial-to-Mesenchymal and Mesenchymal-to-Epithelial Transitions : Role of Histone Variants and Pioneer Transcription Factors... | 12/2019 - 12/2022 |
| 4 | Alzheimer Hastalığının Tanısında ve Yayılımında Nöron Kökenli Ekzozomlar... | 6/2018 - / |
| 5 | Epigenetik Metilasyon Mekanizmalarının Yapısal Biyoloji Çerçevesinde Tanımlanması... | 7/2017 - 7/2018 |
| NO | NAME | DATE |
| 1 | Bilim Akademisi Genç Bilim İnsanları Ödül Programı (BAGEP)... | 2020 |
| NO | NAME | YEAR |
| 1 | Alexander von Humboldt Foundation | 2017 |
